MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-10-P2b

Family name MIR-10 (all species)
Seed ACCCGUA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-10-P1b  Laf-Mir-10-P1c-v1  Laf-Mir-10-P1c-v2  Laf-Mir-10-P2c  Laf-Mir-10-P2d  Laf-Mir-10-P3b  Laf-Mir-10-P3c  Laf-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2b  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cin-Mir-10-P2  Cja-Mir-10-P2b  Cpi-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2b  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Mgi-Mir-10-P2  Mml-Mir-10-P2b  Mmr-Mir-10-P2b  Mmu-Mir-10-P2b  Mom-Mir-10-P2  Mun-Mir-10-P2b  Neu-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2b  Pau-Mir-10-P2  Pbv-Mir-10-P2b  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2b  Rph-Mir-10-P2  Sha-Mir-10-P2b  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xtr-Mir-10-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010031.1: 11806239-11806298 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGGGCCCGGACACCUGGGUCCUGGCACCCACCCGUAGAACCGACCUUGCGGGGCCUUCGCCGCACACAAGCUCGUGUCUGUGGGUCCGUGUCGGGCUCACCAUCACAGCCGGGGCCUC
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Structure
        10           20        30        40        50         
CGGGGGCCCGGACACCU---|  U        CC         AC   C    CGGGGCCU 
                    GGG CCUGGCAC  ACCCGUAGA  CGA CUUG        U
                    CUC GGGCUGUG  UGGGUGUCU  GCU GAAC        C
CUCCGGGGCCGACACUACCA^  -        CC         GU   C    ACACGCCG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-10-P2b_5p
mirBase accessionNone
Sequence 
0- CACCCGUAGAACCGACCUUGCG -22
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Star sequence

Laf-Mir-10-P2b_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAAGCUCGUGUCUGUGGGUCCG -60
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