Mir-10-P2p

MirGeneDB ID

Lpo-Mir-10-P2p

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1k-v2 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1l-v2 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1m-v2 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1n-v2 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P1p-v2 Lpo-Mir-10-P2o Lpo-Mir-10-P2q Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P2 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cgi-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ovu-Mir-10-P2 Pfl-Mir-10-P2 Pmi-Mir-10-P2 Sko-Mir-10-P2 Tca-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665688.1: 595479-595542 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUGAGGGCGAAGUUCACCCUGCCGCCUGAACCCGUAGAAUCGAACUUGUGUUCUACUACUAUUGCAGCCACAAGCUCGUUUCUAUGGGUCUAGGCUGUGAUGGAGGUUUGUCAACGUCAUUA

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Structure

        10         20         30        40        50        60 
GCCUGAGGGCGAAGUUCA-  CU-| C     A          U   A      UUCUACUA 
                   CC   GC GCCUG ACCCGUAGAA CGA CUUGUG        C
                   GG   UG CGGAU UGGGUAUCUU GCU GAACAC        U
AUUACUGCAACUGUUUGGA  UAG^ U     C          U   C      CGACGUUA 
  120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Fe	Fe	Fe	Ma	Ma	To

Mature sequence

Lpo-Mir-10-P2p_5p

mirBase accession

None

Sequence

0- AACCCGUAGAAUCGAACUUGUG -22

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Star sequence

Lpo-Mir-10-P2p_3p*

mirBase accession

None

Sequence

40- CACAAGCUCGUUUCUAUGGGUCUA -64

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