MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-10-P1m-v2

Family name MIR-10 (all species)
Seed ACCCUGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1k-v2  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1l-v2  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1n-v2  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P1p-v2  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666465.1: 260669-260727 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCGAGUGGCUGAUCUAAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUCUGGAUCGUGGUUACAAAUUCGGUUCUAGAGAGGUUAAUGUGGUACAUGUGAAACAACUUCCAUUUU
Get precursor sequence
Structure
        10         20        30         40        50         
CGCCGAGUGGCUGAUCUA-   CU      CU   -| G    U          CUGGAU 
                   AUG  CUACAU  ACC CU UAGA CCGAAUUUGU      \
                   UAC  GGUGUA  UGG GA AUCU GGCUUAAACA      C
UUUUACCUUCAACAAAGUG   AU      AU   A^ G    U          UUGGUG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-10-P1m-v2_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Star sequence

Lpo-Mir-10-P1m-v2_3p*
mirBase accessionNone
Sequence 
37- AAAUUCGGUUCUAGAGAGGUUA -59
Get sequence