Mir-10-P4l

MirGeneDB ID

Lpo-Mir-10-P4l

Family name

MIR-10 (all species)

Seed

AAGCUCG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1k-v2 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1l-v2 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1m-v2 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1n-v2 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P1p-v2 Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P4 Asu-Mir-10-P4 Bge-Mir-10-P4 Bpl-Mir-10-P4 Cte-Mir-10-P4 Dan-Mir-10-P4 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Nve-Mir-10 Tca-Mir-10-P4

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665747.1: 182706-182767 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAACCAGUUUUAAAACUGUCAUUCGUAAUCAGCCCUGUAGAUCUGGGCUUUUGUAGAUUAAACAUAUCAGAAGCUCGUUUCUACGGGUGCCUUACGAAUCAGGCUGAUGUCACCACGAGAAA

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Structure

        10         20          30         40        50        60
CAACCAGUUUUAAAACU-   --|       UCA  -        UC          UAGAUU 
                  GUC  AUUCGUAA   GC CCUGUAGA  UGGGCUUUUG      A
                  CGG  UAAGCAUU   CG GGGCAUCU  GCUCGAAGAC      A
AAAGAGCACCACUGUAGU   AC^       C--  U        UU          UAUACA 
120       110       100          90        80        70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	Fe	Ma	Ma	To

Star sequence

Lpo-Mir-10-P4l_5p* (predicted)

mirBase accession

None

Sequence

0- AGCCCUGUAGAUCUGGGCUUUUG -23

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Mature sequence

Lpo-Mir-10-P4l_3p

mirBase accession

None

Sequence

39- GAAGCUCGUUUCUACGGGUGCCU -62

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