MirGeneDB 3.0

MirGeneDB ID

Lpo-Mir-10-P4l

Family name MIR-10 (all species)
Seed AAGCUCG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1k-v2  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1l-v2  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1m-v2  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1n-v2  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P1p-v2  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bpl-Mir-10-P4  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665747.1: 182706-182767 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACCAGUUUUAAAACUGUCAUUCGUAAUCAGCCCUGUAGAUCUGGGCUUUUGUAGAUUAAACAUAUCAGAAGCUCGUUUCUACGGGUGCCUUACGAAUCAGGCUGAUGUCACCACGAGAAA
Get precursor sequence
Structure
        10         20          30         40        50        60
CAACCAGUUUUAAAACU-   --|       UCA  -        UC          UAGAUU 
                  GUC  AUUCGUAA   GC CCUGUAGA  UGGGCUUUUG      A
                  CGG  UAAGCAUU   CG GGGCAUCU  GCUCGAAGAC      A
AAAGAGCACCACUGUAGU   AC^       C--  U        UU          UAUACA 
120       110       100          90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ge Ge So So So To
Star sequence

Lpo-Mir-10-P4l_5p* (predicted)

mirBase accessionNone
Sequence
0- AGCCCUGUAGAUCUGGGCUUUUG -23
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Mature sequence

Lpo-Mir-10-P4l_3p

mirBase accessionNone
Sequence
39- GAAGCUCGUUUCUACGGGUGCCU -62
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