Mir-10-P4

MirGeneDB ID

Pca-Mir-10-P4

Family name

MIR-10 (all species)

Seed

AAGCUCG

Species

Penis worm (Priapulus caudatus)

MiRBase ID

Paralogues

Pca-Mir-10-P1 Pca-Mir-10-P2 Pca-Mir-10-P3

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dlo-Mir-10-P4-v2 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(Priapulus_caudatus_gca000485595v2)

KQ714929.1: 358590-358652 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGAUAUAUCCAAUAUGAAAAUAUCCUAAAAUACCCUGUAGAUCCGGGUUACUGUGCAUUAAGACACCAGAAGCUCGUUUCUACAGGUAGUUUAGGGAUUUCGUCUAUUCACAGAUGGUCUAC

Get precursor sequence

Structure

        10        20          30        40        50        60 
ACGAUAUAUCCAAUAUGAAAAU--|    A    AC        UC      A   UGCAUU 
                        AUCCU AAAU  CCUGUAGA  CGGGUU CUG      \
                        UAGGG UUUG  GGACAUCU  GCUCGA GAC      A
CAUCUGGUAGACACUUAUCUGCUU^    A    AU        UU      A   CACAGA 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Gi	In	To

Star sequence

Pca-Mir-10-P4_5p* (predicted)

mirBase accession

None

Sequence

0- AUACCCUGUAGAUCCGGGUUACUG -24

Get sequence

Mature sequence

Pca-Mir-10-P4_3p

mirBase accession

None

Sequence

39- GAAGCUCGUUUCUACAGGUAGUUU -63

Get sequence