MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-10-P4w

Family name MIR-10 (all species)
Seed ACCCUGU
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-993a-1
Paralogues Tur-Mir-10-P1y  Tur-Mir-10-P1z-v1  Tur-Mir-10-P1z-v2  Tur-Mir-10-P2  Tur-Mir-10-P4u  Tur-Mir-10-P4v 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bpl-Mir-10-P4  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4 
Node of Origin (locus) T. urticae
Node of Origin (family) Eumetazoa
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587311.1: 2464812-2464873 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P4w)
Mir-10-P4w HE587311.1: 2464812-2464873 [-] Ensembl
Mir-10-P4v HE587311.1: 2465365-2465427 [-] Ensembl
Mir-10-P4u HE587311.1: 2466151-2466214 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUUUAAUGCUGGAAGCCAUUAGCGAGUUACCCUGUAGACCCGGGCUUUUGUAGACCCGAAAGAGUCAGAAGCUCGUUUCUACAGGUUUCUCGAUGAUGUGUGCCACUCUCAACCCAGCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUUGUUUAAUGCUGGAA-  -|    G    UU   C      CC          UAGACCC 
                  GC CAUUA CGAG  ACC UGUAGA  CGGGCUUUUG       \
                  UG GUAGU GCUC  UGG ACAUCU  GCUCGAAGAC       G
ACGACCCAACUCUCACCG  U^    A    UU   -      UU          UGAGAAA 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut _1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
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Mature sequence

Tur-Mir-10-P4w_5p

mirBase accessionMIMAT0023058
Sequence
0- UACCCUGUAGACCCGGGCUUUUG -23
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Co-mature sequence

Tur-Mir-10-P4w_3p

mirBase accessionMIMAT0023059
Sequence
40- GAAGCUCGUUUCUACAGGUUUC -62
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