MirGeneDB ID | Pdu-Mir-10-P4 |
Family name |
MIR-10 (all species) |
Seed |
GAAGCUC |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-10-P1
Pdu-Mir-10-P2
Pdu-Mir-10-P3
Pdu-Mir-10-P4-as
Pdu-Mir-10-P5
Pdu-Mir-10-P7
Pdu-Mir-10-P8
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Orthologues |
Aae-Mir-10-P4
Adi-Mir-10
Aga-Mir-10-P4
Asp-Mir-10
Asu-Mir-10-P4
Ava-Mir-10-P4
Bge-Mir-10-P4
Bko-Mir-10-P4o1
Bko-Mir-10-P4o2
Bpl-Mir-10-P4
Csc-Mir-10-P4q
Csc-Mir-10-P4r
Cte-Mir-10-P4
Dan-Mir-10-P4
Dgr-Mir-10-P4
Dlo-Mir-10-P4-v1
Dlo-Mir-10-P4-v2
Dma-Mir-10-P4
Dme-Mir-10-P4
Dmo-Mir-10-P4
Dpu-Mir-10-P4
Dsi-Mir-10-P4
Dya-Mir-10-P4
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Gpa-Mir-10-P4
Gsa-Mir-10-P4
Hme-Mir-10-P4
Isc-Mir-10-P4
Lan-Mir-10-P4d
Lan-Mir-10-P4e
Llo-Mir-10-P4-v1
Llo-Mir-10-P4-v2
Lpo-Mir-10-P4j
Lpo-Mir-10-P4k
Lpo-Mir-10-P4l
Lpo-Mir-10-P4m
Lpo-Mir-10-P4n
Nve-Mir-10
Ofu-Mir-10-P4
Pca-Mir-10-P4
Pcr-Mir-10-P4s1
Pcr-Mir-10-P4s2
Pcr-Mir-10-P4t
Snu-Mir-10-P4
Tca-Mir-10-P4
Tur-Mir-10-P4u
Tur-Mir-10-P4v
Tur-Mir-10-P4w
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Eumetazoa
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000027.1: 3633349-3633410 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUUUGUUGGCAUGCGCAUUCUGCAUAUACCCUGUAGACCCGGGUUUGUGUUGUUCAGAGCAAAUCACAGAAGCUCGGUUCUACAGGUAUAUUUUGAACGCGCUUUCUACGGUGAAUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUUUGUUGGCAUGC--| A UGC C C G UGUUCAG
GC UUC AUAUACC UGUAGA CCGGGUUU UGU \
CG AAG UAUAUGG ACAUCU GGCUCGAA ACA A
UUAUAAGUGGCAUCUUUCG^ C UUU - U G CUAAACG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-10-P4_5p* |
mirBase accession | None |
Sequence |
0- ACCCUGUAGACCCGGGUUUGUGU -23
Get sequence
|
Mature sequence |
Pdu-Mir-10-P4_3p |
mirBase accession | None |
Sequence |
40- AGAAGCUCGGUUCUACAGGUAU -62
Get sequence
|