Mir-10-P5

MirGeneDB ID

Pdu-Mir-10-P5

Family name

MIR-10 (all species)

Seed

UACCCUG

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-10-P1 Pdu-Mir-10-P2 Pdu-Mir-10-P3 Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Pdu-Mir-10-P7 Pdu-Mir-10-P8

Orthologues

Adi-Mir-10 Agr-Mir-10-P5 Asp-Mir-10 Cte-Mir-10-P5 Eba-Mir-10-P5 Efe-Mir-10-P5a Efe-Mir-10-P5b Hru-Mir-10-P5 Lgi-Mir-10-P5 Lhy-Mir-10-P5 Llo-Mir-10-P5a-v1 Llo-Mir-10-P5a-v2 Llo-Mir-10-P5b-v1 Llo-Mir-10-P5b-v2 Llo-Mir-10-P5b-v3 Mgi-Mir-10-P5 Mom-Mir-10-P5 Nve-Mir-10 Ofu-Mir-10-P5 Pau-Mir-10-P5 Pve-Mir-10-P5 Rph-Mir-10-P5 Snu-Mir-10-P5 War-Mir-10-P5

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Eumetazoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000027.1: 2892359-2892418 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAUUUAUUUUUGAAUGUCUGAUAUACCCUUACCCUGUAGAACCGAGCGAGUAUGUAUUCAUUAGUACCACUCAGUUCACAGGGUCAUUGUAUGCCAUUCUAAUUGCUACUGACCACGU

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Structure

        10        20          30        40        50          
AAAAUUUAUUUUUGAAUGUC--| A     CCUU       A    C   CGAGUAUGUAU 
                      UG UAUAC    ACCCUGU GAAC GAG           \
                      AC GUAUG    UGGGACA CUUG CUC           U
UGCACCAGUCAUCGUUAAUCUU^ C     UUAC       -    A   ACCAUGAUUAC 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-10-P5_5p

mirBase accession

None

Sequence

0- UUACCCUGUAGAACCGAGCGAGU -23

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Star sequence

Pdu-Mir-10-P5_3p*

mirBase accession

None

Sequence

38- CCACUCAGUUCACAGGGUCAUU -60

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