Mir-10-P5

MirGeneDB ID

Snu-Mir-10-P5

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Peanut worm (Sipunculus nudus)

MiRBase ID

Paralogues

Snu-Mir-10-P1 Snu-Mir-10-P2 Snu-Mir-10-P3 Snu-Mir-10-P4

Orthologues

Adi-Mir-10 Agr-Mir-10-P5 Asp-Mir-10 Cte-Mir-10-P5 Eba-Mir-10-P5 Efe-Mir-10-P5a Efe-Mir-10-P5b Hru-Mir-10-P5 Lgi-Mir-10-P5 Lhy-Mir-10-P5 Llo-Mir-10-P5a-v1 Llo-Mir-10-P5a-v2 Llo-Mir-10-P5b-v1 Llo-Mir-10-P5b-v2 Llo-Mir-10-P5b-v3 Mgi-Mir-10-P5 Mom-Mir-10-P5 Nve-Mir-10 Ofu-Mir-10-P5 Pau-Mir-10-P5 Pdu-Mir-10-P5 Pve-Mir-10-P5 Rph-Mir-10-P5 War-Mir-10-P5

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Eumetazoa

Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)

CM049317.1: 57344023-57344084 [-]

Precursor
(pre-Mir +30nt flank)

GUCUUGGAUUGAAAAAGUGGGCGUGCCGCAAACCCUGUAGAACCGAGCUUGUGUUCAUAGAAAACCCUCACAAGCCGGCUCUACACGGUUACCAUGGCAACCUUCUAAUCGACCCAGGCUCA

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Structure

        10         20        30          40        50        60 
GUCUUGGAUUGAAAAAGU-   CG     CA--|   C      A   A       UUCAUAG 
                   GGG  UGCCG    AACC UGUAGA CCG GCUUGUG       \
                   UCC  ACGGU    UUGG ACAUCU GGC CGAACAC       A
ACUCGGACCCAGCUAAUCU   A-     ACCA^   C      C   -       UCCCAAA 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Snu-Mir-10-P5_5p

mirBase accession

None

Sequence

0- AACCCUGUAGAACCGAGCUUGUG -23

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Star sequence

Snu-Mir-10-P5_3p* (predicted)

mirBase accession

None

Sequence

40- CAAGCCGGCUCUACACGGUUAC -62

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