MirGeneDB ID | Hru-Mir-10-P5 |
Family name |
MIR-10 (all species) |
Seed |
UACCCUG |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
Hru-Mir-10-P1
Hru-Mir-10-P2
Hru-Mir-10-P3
Hru-Mir-10-P6
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P5
Asp-Mir-10
Cte-Mir-10-P5
Eba-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Lgi-Mir-10-P5
Lhy-Mir-10-P5
Llo-Mir-10-P5a-v1
Llo-Mir-10-P5a-v2
Llo-Mir-10-P5b-v1
Llo-Mir-10-P5b-v2
Llo-Mir-10-P5b-v3
Mgi-Mir-10-P5
Mom-Mir-10-P5
Nve-Mir-10
Ofu-Mir-10-P5
Pau-Mir-10-P5
Pdu-Mir-10-P5
Pve-Mir-10-P5
Rph-Mir-10-P5
Snu-Mir-10-P5
War-Mir-10-P5
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000004.1: 46892451-46892509 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACGAUGCUUGCGCUCUGUUCAUACUGUAUUUACCCUGUUGAACCGAGCUAGUGACGUCACGCAACACUGUUCGUUUCUGAGGGUUAAUAAAGUAUGUUCAAUAUCAUCACCAUGGUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CACGAUGCUUGCGCUCU--|UU G U GUU C U ACGUC
G CAUACU UAUU ACCCU GAA CGAGC AGUG \
C GUAUGA AUAA UGGGA CUU GCUUG UCAC A
AAUGGUACCACUACUAUAA^UU A U GU- U - AACGC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Hru-Mir-10-P5_5p |
mirBase accession | None |
Sequence |
0- UUACCCUGUUGAACCGAGCUAGUG -24
Get sequence
|
Star sequence |
Hru-Mir-10-P5_3p* |
mirBase accession | None |
Sequence |
37- CUGUUCGUUUCUGAGGGUUAAU -59
Get sequence
|