MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-10-P5

Family name MIR-10 (all species)
Seed UACCCUG
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-10-P1  Hru-Mir-10-P2  Hru-Mir-10-P3  Hru-Mir-10-P6 
Orthologues Adi-Mir-10  Agr-Mir-10-P5  Asp-Mir-10  Cte-Mir-10-P5  Eba-Mir-10-P5  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Lgi-Mir-10-P5  Lhy-Mir-10-P5  Llo-Mir-10-P5a-v1  Llo-Mir-10-P5a-v2  Llo-Mir-10-P5b-v1  Llo-Mir-10-P5b-v2  Llo-Mir-10-P5b-v3  Mgi-Mir-10-P5  Mom-Mir-10-P5  Nve-Mir-10  Ofu-Mir-10-P5  Pau-Mir-10-P5  Pdu-Mir-10-P5  Pve-Mir-10-P5  Rph-Mir-10-P5  Snu-Mir-10-P5  War-Mir-10-P5 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000004.1: 46892451-46892509 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACGAUGCUUGCGCUCUGUUCAUACUGUAUUUACCCUGUUGAACCGAGCUAGUGACGUCACGCAACACUGUUCGUUUCUGAGGGUUAAUAAAGUAUGUUCAAUAUCAUCACCAUGGUAA
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Structure
        10          20        30        40        50          
CACGAUGCUUGCGCUCU--|UU      G    U     GUU   C     U    ACGUC 
                   G  CAUACU UAUU ACCCU   GAA CGAGC AGUG     \
                   C  GUAUGA AUAA UGGGA   CUU GCUUG UCAC     A
AAUGGUACCACUACUAUAA^UU      A    U     GU-   U     -    AACGC 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ha Ha
Mature sequence

Hru-Mir-10-P5_5p
mirBase accessionNone
Sequence 
0- UUACCCUGUUGAACCGAGCUAGUG -24
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Star sequence

Hru-Mir-10-P5_3p*
mirBase accessionNone
Sequence 
37- CUGUUCGUUUCUGAGGGUUAAU -59
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