Mir-10-P5

MirGeneDB ID

Lhy-Mir-10-P5

Family name

MIR-10 (all species)

Seed

UACCCUG

Species

Laevipilina (Monoplacophora) (Laevipilina hyalina)

MiRBase ID

Paralogues

Lhy-Mir-10-P1 Lhy-Mir-10-P2 Lhy-Mir-10-P3 Lhy-Mir-10-P6

Orthologues

Adi-Mir-10 Agr-Mir-10-P5 Asp-Mir-10 Cte-Mir-10-P5 Eba-Mir-10-P5 Efe-Mir-10-P5a Efe-Mir-10-P5b Hru-Mir-10-P5 Lgi-Mir-10-P5 Llo-Mir-10-P5a-v1 Llo-Mir-10-P5a-v2 Llo-Mir-10-P5b-v1 Llo-Mir-10-P5b-v2 Llo-Mir-10-P5b-v3 Mgi-Mir-10-P5 Mom-Mir-10-P5 Nve-Mir-10 Ofu-Mir-10-P5 Pau-Mir-10-P5 Pdu-Mir-10-P5 Pve-Mir-10-P5 Rph-Mir-10-P5 Snu-Mir-10-P5 War-Mir-10-P5

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Eumetazoa

Genome context
(Mono_atcgn_nospaces)

scaffold128389_22.4: 1524-1582 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGAAUACCGUCCUUUGUGCACGUCGCUUUUACCCUGUUGAACCGAGCGAGUGGAGGUAUAACACACUGUUCGAUUCUCGGGGUCAACGAGAUGUGUUCAGUUUCUUCGGGAUUUAUC

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Structure

        10          20        30        40        50          
CGAGAAUACCGUCCUUU--|U       GCUUUU      UU   C     G   GGAGGU 
                   G GCACGUC      ACCCUG  GAA CGAGC AGU      \
                   C UGUGUAG      UGGGGC  CUU GCUUG UCA      A
CUAUUUAGGGCUUCUUUGA^U       AGCAAC      U-   A     -   CACAAU 
       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

La

Mature sequence

Lhy-Mir-10-P5_5p

mirBase accession

None

Sequence

0- UUACCCUGUUGAACCGAGCGAGU -23

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Star sequence

Lhy-Mir-10-P5_3p*

mirBase accession

None

Sequence

37- CUGUUCGAUUCUCGGGGUCAAC -59

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