MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-10-P5

Family name MIR-10 (all species)
Seed UACCCUG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-10-P1  Rph-Mir-10-P2  Rph-Mir-10-P3  Rph-Mir-10-P6 
Orthologues Adi-Mir-10  Agr-Mir-10-P5  Asp-Mir-10  Cte-Mir-10-P5  Eba-Mir-10-P5  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Hru-Mir-10-P5  Lgi-Mir-10-P5  Lhy-Mir-10-P5  Llo-Mir-10-P5a-v1  Llo-Mir-10-P5a-v2  Llo-Mir-10-P5b-v1  Llo-Mir-10-P5b-v2  Llo-Mir-10-P5b-v3  Mgi-Mir-10-P5  Mom-Mir-10-P5  Nve-Mir-10  Ofu-Mir-10-P5  Pau-Mir-10-P5  Pdu-Mir-10-P5  Pve-Mir-10-P5  Snu-Mir-10-P5  War-Mir-10-P5 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(Ruditapes_GCA_009026015)		 CM018531.1: 24119047-24119105 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAAGAACAUUUUAACACCAUGGCAUGUUUACCCUGUUGAACCGAGCGUGUGUUUUUACAUUUCACCGCUCCUUUCUCAGGGUCAGUGAGUCAUGGAUGAUAGCAAGAGACGGUUAC
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Structure
        10          20        30        40        50          
AAGAAAGAACAUUUUAA-  -|      A GU U      UU   CC     U   UUUUU 
                  CA CCAUGGC U  U ACCCUG  GAA  GAGCG GUG     \
                  GU GGUACUG G  A UGGGAC  CUU  CUCGC CAC     A
CAUUGGCAGAGAACGAUA  A^      A UG C      U-   UC     -   UUUAC 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-10-P5_5p
mirBase accessionNone
Sequence 
0- UUACCCUGUUGAACCGAGCGUGUG -24
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Star sequence

Rph-Mir-10-P5_3p*
mirBase accessionNone
Sequence 
37- CCGCUCCUUUCUCAGGGUCAGU -59
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