MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-10-P4

Family name MIR-10 (all species)
Seed AAGCUCG
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-993
Paralogues Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4o1  Bko-Mir-10-P4o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(Hmel_1)		 HE667778: 86419-86482 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGAAACAUUUAUUGGCACAUUCGUGAUCUACCCUGUAGAUCCGGGCUUUUGUAGUUUAAUUUUCAUCAGAAGCUCGUCUCUACAGGUAUCUCACGGCUGGAAGACCUCGCUACUUUGUUAC
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Structure
        10        20          30        40        50        60  
AGAAGAAACAUUUAUUGGCA--| UU     UC    C      UC          UAGUUUA 
                      CA  CGUGA  UACC UGUAGA  CGGGCUUUUG       \
                      GU  GCACU  AUGG ACAUCU  GCUCGAAGAC       A
CAUUGUUUCAUCGCUCCAGAAG^ CG     CU    -      CU          UACUUUU 
  120       110       100        90         80        70
Deep sequencing
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CommentThere are Drosha cuts +1 and +2 relative to what is annoated here.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-10-P4_5p*
mirBase accessionNone
Sequence 
0- CUACCCUGUAGAUCCGGGCUUUUG -24
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Mature sequence

Hme-Mir-10-P4_3p
mirBase accessionMIMAT0025000
Sequence 
41- GAAGCUCGUCUCUACAGGUAUCU -64
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