MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-10-P4

Family name MIR-10 (all species)
Seed AAGCUCG
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-10-P1  Gpa-Mir-10-P2  Gpa-Mir-10-P3 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4o1  Bko-Mir-10-P4o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(GpalI1)		 JMRQ01006282: 139879-139971 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGCUUUUUAAUUAAACGCUCCCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUUAACAGCAUUCUAUGUGUUUAGAAAACAUCUUUUCCGCUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAGUAAUCAACCUUAAGUGA
Get precursor sequence
Structure
        10         20          30        40        50        60        70      
ACGGCUUUUUAAUUAAACG-  -   -|   CC    C     UUC          UUUUAACAGCAUUCUAUGUGUU 
                    CU CCC GUGA  UACC UGUAG   CGGGCUUUUG                      \
                    GA GGG CACU  AUGG ACAUC   GCUCGAAGAC                      U
AGUGAAUUCCAACUAAUGAA  U   A^   CU    -     UCU          UAUUCGCCUUUUCUACAAAAGA 
 150       140       130       120        110       100        90        80
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-10-P4_5p*
mirBase accessionNone
Sequence 
0- UACCCUGUAGUUCCGGGCUUUUG -23
Get sequence
Mature sequence

Gpa-Mir-10-P4_3p
mirBase accessionNone
Sequence 
70- GAAGCUCGUCUCUACAGGUAUCU -93
Get sequence