Mir-10-P1z-v1

MirGeneDB ID

Tur-Mir-10-P1z-v1

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-10

Paralogues

Tur-Mir-10-P1y Tur-Mir-10-P1z-v2 Tur-Mir-10-P2 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Mgi-Mir-10-P1 Mom-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 War-Mir-10-P1 Xbo-Mir-10-P1

Node of Origin (locus)

T. urticae

Node of Origin (family)

Eumetazoa

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587320.1: 1111621-1111681 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1z-v1)

Mir-10-P1z-v2 HE587320.1: 1111620-1111682 [+] Ensembl
Mir-10-P1z-v1 HE587320.1: 1111621-1111681 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUGUUUGACCAACUAUUGCUCUACAUUCACCCUGUAGAUCCGAAUUUGUCAGAAAAUUGAUUUGCCACGAAUUCGGCUCUAGAGAGGUUUGUGUGGUGCAUAUCAUGCAUCAUCUACUC

Get precursor sequence

Structure

        10         20        30         40        50          
GUGUGUUUGACCAACUAU-   U      UC   -| G    U          CAGAAAAU 
                   UGC CUACAU  ACC CU UAGA CCGAAUUUGU        \
                   ACG GGUGUG  UGG GA AUCU GGCUUAAGCA        U
CUCAUCUACUACGUACUAU   U      UU   A^ G    C          CCGUUUAG 
 .       110       100        90        80        70