MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-10-P2k

Family name MIR-10 (all species)
Seed ACCCGUA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-10-P1  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2j  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Efe-Mir-10-P6  Efe-Mir-10-P7a  Efe-Mir-10-P7b 
Orthologues Aae-Mir-10-P2  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Mgi-Mir-10-P2  Mom-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pau-Mir-10-P2  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rph-Mir-10-P2  Sko-Mir-10-P2  Snu-Mir-10-P2  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) E. fetida
Node of Origin (family) Eumetazoa
Genome context
(Efe_combined)		 Efet.01.530201: 300-362 [-]
Precursor
(pre-Mir +30nt flank)
UAAGAAGAAAUCCUUCUGAAUGGUAACAUAAACCCGUACGCUUGAACUUGUGAUGAAAAUGUUCAAAACCACAAGUCGAGUGCUGCGGGUCUUGUGUCGCCAAGUUGACCAACACCAUUCAAA
Get precursor sequence
Structure
        10        20         30          40        50        60 
UAAGAAGAAAUCCUUCUGAA-   UA      -       -|      A      AUGAAAAU 
                     UGG  ACAUAA ACCCGUA CGCUUGA CUUGUG        \
                     ACC  UGUGUU UGGGCGU GUGAGCU GAACAC        G
AAACUUACCACAACCAGUUGA   GC      C       C^      -      CAAAACUU 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Efe-Mir-10-P2k_5p
mirBase accessionNone
Sequence 
0- AACCCGUACGCUUGAACUUGUG -22
Get sequence
Star sequence

Efe-Mir-10-P2k_3p*
mirBase accessionNone
Sequence 
41- CAAGUCGAGUGCUGCGGGUCUU -63
Get sequence