MirGeneDB 2.1
MirGeneDB ID

Gmo-Let-7-P2b3a

Family name LET-7 (all species)
Seed GAGGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7h-1
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Ami-Let-7-P2b3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cgi-Let-7  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Hme-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mml-Let-7-P2b3  Mmu-Let-7-P2b3  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ovu-Let-7  Pbv-Let-7-P2b3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2b3  Sko-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2603: 770560-770640 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b3a)		 Let-7-P2a3a GeneScaffold_2603: 770245-770315 [+] UCSC Ensembl
Let-7-P2b3a GeneScaffold_2603: 770560-770640 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAAUGUCCGAAUCUGGCUAUGCUGUGGUGAGGUAGUAAGUUGUGUUGUUGUUGGGGAUCAGGAUUAUUCACCCCGUUCAGGAGAUAACUAUACAACUUACUGCCUUCCUCAGUGUAGGCCCUGAACAUCAUGGUGGUG
Get precursor sequence
Structure
        10          20        30        40        50        60        70
UAUUAAUGUCCGAAUCU-  -|       U  U                 U   GUUGGGGAUCAGGAUUA 
                  GG CUAUGCUG GG GAGGUAGUAAGUUGUGU GUU                 U
                  CC GAUGUGAC CC UUCCGUCAUUCAACAUA CAA                 U
GUGGUGGUACUACAAGUC  G^       U  -                 U   UAGAGGACUUGCCCCAC 
 .       130       120       110        100        90        80
Deep sequencing
Go to detailed chart
CommentAlthough there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the conservation of Let7-P2 processing.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P2b3a_5p
mirBase accessionMIMAT0044165
Sequence 
0- UGAGGUAGUAAGUUGUGUUGUU -22
Get sequence
Star sequence

Gmo-Let-7-P2b3a_3p*
mirBase accessionMIMAT0044202
Sequence 
60- CUAUACAACUUACUGCCUUCC -81
Get sequence