MirGeneDB ID | Gja-Let-7-P2b3 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Let-7-P1b
Gja-Let-7-P1c
Gja-Let-7-P1d
Gja-Let-7-P2a1
Gja-Let-7-P2a2
Gja-Let-7-P2a3
Gja-Let-7-P2a4
Gja-Let-7-P2b1
Gja-Let-7-P2b2
Gja-Let-7-P2b4
Gja-Let-7-P2c1
Gja-Let-7-P2c2
Gja-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b3
Ami-Let-7-P2b3
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2b3
Cfa-Let-7-P2b3
Cgi-Let-7
Cpi-Let-7-P2b3
Cpo-Let-7-P2b3
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b3
Dpu-Let-7
Dre-Let-7-P2b3a
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2b3
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Hme-Let-7
Hsa-Let-7-P2b3
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Loc-Let-7-P2b3
Mal-Let-7-P2b3a
Mml-Let-7-P2b3
Mmu-Let-7-P2b3
Mun-Let-7-P2b3
Npo-Let-7
Oan-Let-7-P2b3
Obi-Let-7
Ocu-Let-7-P2b3
Ovu-Let-7
Pbv-Let-7-P2b3
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2b3
Sko-Let-7
Spt-Let-7-P2b3
Spu-Let-7
Sto-Let-7-P2b3
Tca-Let-7
Tni-Let-7-P2b3a
Tni-Let-7-P2b3b
Xbo-Let-7
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xtr-Let-7-P2b3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015173237.1: 128629-128706 [+]
|
Precursor (pre-Mir +30nt flank) |
GGGGAGGUGUCUCCGUUGCUCCUGCUGAGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUGUGCCCCAAAUCAGAGAUAACUAUACAACUUACUACUUUCCCCAGCUGGGGUGAAGUGCCCAGGAUUUGGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGGGAGGUGUCUCCGUU--| U A UG U GUGGGGUAGGGAUUUG
GCUCC GCUG GG AGGUAGUAAGUUGUAU GUU \
UGGGG CGAC CC UUCAUCAUUCAACAUA CAA U
GGGUUUAGGACCCGUGAAG^ U - CU U UAGAGACUAAACCCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is likely a 1 nt mismatch at position 11 on the 5p arm between the source of the genome (G. japonicus) and the source of the reads (C. variegatus) accounting for the paucity of reads of the mature miRNA. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Gja-Let-7-P2b3_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAAGUUGUAUUGUU -22
Get sequence
|
Star sequence |
Gja-Let-7-P2b3_3p* |
mirBase accession | None |
Sequence |
57- CUAUACAACUUACUACUUUCC -78
Get sequence
|