MirGeneDB 2.1

MirGeneDB ID

Tni-Let-7-P2c2a

Family name LET-7 (all species)
Seed GAGGUAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Let-7-P1b1  Tni-Let-7-P1b2  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tni-Let-7-P2b2a  Tni-Let-7-P2b2b  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tni-Let-7-P2c2b  Tni-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2c2  Ami-Let-7-P2c2  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c2  Cfa-Let-7-P2c2  Cgi-Let-7  Cli-Let-7-P2c2  Cmi-Let-7-P2c2  Cpi-Let-7-P2c2  Cpo-Let-7-P2c2  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c2  Dpu-Let-7  Dre-Let-7-P2c2b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c2  Gga-Let-7-P2c2  Gja-Let-7-P2c2  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Hme-Let-7  Hsa-Let-7-P2c2  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c2  Lgi-Let-7  Loc-Let-7-P2c2  Mal-Let-7-P2c2b  Mdo-Let-7-P2c2  Mml-Let-7-P2c2  Mmu-Let-7-P2c2  Mun-Let-7-P2c2  Npo-Let-7  Oan-Let-7-P2c2  Obi-Let-7  Ocu-Let-7-P2c2  Ovu-Let-7  Pbv-Let-7-P2c2  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c2  Sha-Let-7-P2c2  Sko-Let-7  Spt-Let-7-P2c2  Spu-Let-7  Sto-Let-7-P2c2  Tca-Let-7  Tgu-Let-7-P2c2  Xbo-Let-7  Xla-Let-7-P2c2  Xtr-Let-7-P2c2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
19: 5408223-5408295 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGAGCCACGGAGGGGGCCAGGCGCCGGCUGAGGUAGUAGUUUGUGCUGUUGGGUUGUCAUAUUACCCCUUGUGGAGAUGACUGCGCAAUCUACUGCCUUGCUGGCGCUGGUGACCGACGGCGGUGGAAUGA
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Structure
        10           20        30        40        50        60      
AUGGAGCCACGGAGGGG---|    G       U          U      U   GGGUUGUCAUAUU 
                    GCCAG CGCCGGC GAGGUAGUAG UUGUGC GUU             A
                    UGGUC GCGGUCG UUCCGUCAUC AACGCG CAG             C
AGUAAGGUGGCGGCAGCCAG^    -       -          U      U   UAGAGGUGUUCCC 
 130       120       110         100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Let-7-P2c2a_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGUUUGUGCUGUU -22
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Star sequence

Tni-Let-7-P2c2a_3p*

mirBase accessionNone
Sequence
52- CUGCGCAAUCUACUGCCUUGC -73
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