Let-7-P1d1

MirGeneDB ID

Tni-Let-7-P1d1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Let-7-P1b1 Tni-Let-7-P1b2 Tni-Let-7-P1d2 Tni-Let-7-P2a2a Tni-Let-7-P2a2b Tni-Let-7-P2a3a Tni-Let-7-P2a3b Tni-Let-7-P2a4a Tni-Let-7-P2a4b Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tni-Let-7-P2b3a Tni-Let-7-P2b3b Tni-Let-7-P2b4a Tni-Let-7-P2b4b Tni-Let-7-P2c2a Tni-Let-7-P2c2b Tni-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1d Aga-Let-7 Agr-Let-7 Ami-Let-7-P1d Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1d Cfa-Let-7-P1d Cin-Let-7-P1 Cja-Let-7-P1d Cli-Let-7-P1d Cmi-Let-7-P1d Cpi-Let-7-P1d Cpo-Let-7-P1d Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1d Dpu-Let-7 Dre-Let-7-P1d1 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1d Egr-Let-7 Esc-Let-7 Ete-Let-7-P1d Gga-Let-7-P1d Gja-Let-7-P1d Gmo-Let-7-P1d1 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1d Isc-Let-7 Laf-Let-7-P1d Lan-Let-7 Lch-Let-7-P1d Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1d Mal-Let-7-P1d1 Mdo-Let-7-P1d Mgi-Let-7 Mml-Let-7-P1d Mmr-Let-7-P1d Mmu-Let-7-P1d Mom-Let-7 Mun-Let-7-P1d Neu-Let-7-P1d Npo-Let-7 Oan-Let-7-P1d Obi-Let-7 Ocu-Let-7-P1d Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1d Pau-Let-7 Pbv-Let-7-P1d Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1d Rph-Let-7 Sha-Let-7-P1d Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1d Spu-Let-7 Sro-Let-7 Sto-Let-7-P1d Tca-Let-7 Tgu-Let-7-P1d Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

16: 8250022-8250088 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCGUCCUCCAGGUCUGCUUGCUCCAAGGUUGAGGUAGUAGGUUGUAUAGUUGAGAGUUACACCCCCAGAGAUAACUGUACAGCCUCCUAGCUUUCCCUGAGCUACGCACGCCGCGCUGCACAGCUG

Get precursor sequence

Structure

        10        20            30        40        50        60   
AGCGUCCUCCAGGUCUGCUU----|   CA   UU   G   U             GAGAGUUACA 
                        GCUC  AGG  GAG UAG AGGUUGUAUAGUU          \
                        CGAG  UCC  UUC AUC UCCGACAUGUCAA          C
GUCGACACGUCGCGCCGCACGCAU^   --   CU   G   C             UAGAGACCCC 
     120       110       100          90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Let-7-P1d1_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Star sequence

Tni-Let-7-P1d1_3p*

mirBase accession

None

Sequence

45- CUGUACAGCCUCCUAGCUUUCC -67

Get sequence