MirGeneDB 2.1

MirGeneDB ID

Tni-Let-7-P1d2

Family name LET-7 (all species)
Seed GAGGUAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-let-7a-1
Paralogues Tni-Let-7-P1b1  Tni-Let-7-P1b2  Tni-Let-7-P1d1  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tni-Let-7-P2b2a  Tni-Let-7-P2b2b  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tni-Let-7-P2c2a  Tni-Let-7-P2c2b  Tni-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d2  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
7: 5619183-5619249 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d2)
Mir-10-P3d2 7: 5613643-5613704 [-] UCSC Ensembl
Let-7-P1d2 7: 5619183-5619249 [-] UCSC Ensembl
Mir-10-P2d2 7: 5619637-5619693 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCUUGGUGGCCUUCGGUGUUCCGCAGGGUGAGGUAGUAGGUUGUAUAGUUGAGAGUGACACCACAGGAGAUAACUGUACAGCCUCCUAGCUUUCCCUGAGGAAACACGACACACACACACACACA
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Structure
        10         20         30        40        50        60   
UCCCUUGGUGGCCUUCG-   -|   G     U   G   U             GAGAGUGACA 
                  GUG UUCC CAGGG GAG UAG AGGUUGUAUAGUU          \
                  CAC AAGG GUCCC UUC AUC UCCGACAUGUCAA          C
ACACACACACACACACAG   A^   A     U   G   C             UAGAGGACAC 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Let-7-P1d2_5p

mirBase accessionMIMAT0002929
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Tni-Let-7-P1d2_3p*

mirBase accessionNone
Sequence
45- CUGUACAGCCUCCUAGCUUUCC -67
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