Let-7-P2c2

MirGeneDB ID

Loc-Let-7-P2c2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Let-7-P1b Loc-Let-7-P1c Loc-Let-7-P1d Loc-Let-7-P2a1 Loc-Let-7-P2a2 Loc-Let-7-P2a3 Loc-Let-7-P2a4 Loc-Let-7-P2b1 Loc-Let-7-P2b2 Loc-Let-7-P2b3 Loc-Let-7-P2b4 Loc-Let-7-P2c1 Loc-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2c2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2c2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2c2 Cfa-Let-7-P2c2 Cja-Let-7-P2c2 Cli-Let-7-P2c2 Cmi-Let-7-P2c2 Cpi-Let-7-P2c2 Cpo-Let-7-P2c2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c2 Dpu-Let-7 Dre-Let-7-P2c2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2c2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2c2 Gga-Let-7-P2c2 Gja-Let-7-P2c2 Gmo-Let-7-P2c2a Gmo-Let-7-P2c2b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2c2 Isc-Let-7 Laf-Let-7-P2c2 Lan-Let-7 Lch-Let-7-P2c2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mal-Let-7-P2c2b Mdo-Let-7-P2c2 Mgi-Let-7 Mml-Let-7-P2c2 Mmr-Let-7-P2c2 Mmu-Let-7-P2c2 Mom-Let-7 Mun-Let-7-P2c2 Neu-Let-7-P2c2 Npo-Let-7 Oan-Let-7-P2c2 Obi-Let-7 Ocu-Let-7-P2c2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2c2 Pau-Let-7 Pbv-Let-7-P2c2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2c2 Rph-Let-7 Sha-Let-7-P2c2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2c2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2c2 Tca-Let-7 Tgu-Let-7-P2c2 Tni-Let-7-P2c2a Tni-Let-7-P2c2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2c2 Xtr-Let-7-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG8: 47593871-47593947 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGCCGCCGUUGGACACACCAGACCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUUGGGUUGUGACAUUGCCCGCUAUGGAGGUGACUGCGCAAGCUACUGCCUUGCUAGUGCUGGCGACGCGCUGCGGACACGAAG

Get precursor sequence

Structure

        10            20        30        40        50        60        
GGCCGCCGUUGGACACA----|   ACCC     U                 U   GGUUGGGUUGUGACA 
                     CCAG    CUGGC GAGGUAGUAGUUUGUGC GUU               U
                     GGUC    GAUCG UUCCGUCAUCGAACGCG CAG               U
GAAGCACAGGCGUCGCGCAGC^   GU--     -                 U   UGGAGGUAUCGCCCG 
     130       120         110        100        90        80        70

Deep sequencing

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Comment

The 3' NTU is templated but where known Let-P2s are always post-transcriptionally modified and thus sequence is treated accordingly.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Let-7-P2c2_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGUUUGUGCUGUU -22

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Star sequence

Loc-Let-7-P2c2_3p*

mirBase accession

None

Sequence

56- CUGCGCAAGCUACUGCCUUGC -77

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