MirGeneDB 2.1

MirGeneDB ID

Loc-Let-7-P2a3

Family name LET-7 (all species)
Seed GAGGUAG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Let-7-P1b  Loc-Let-7-P1c  Loc-Let-7-P1d  Loc-Let-7-P2a1  Loc-Let-7-P2a2  Loc-Let-7-P2a4  Loc-Let-7-P2b1  Loc-Let-7-P2b2  Loc-Let-7-P2b3  Loc-Let-7-P2b4  Loc-Let-7-P2c1  Loc-Let-7-P2c2  Loc-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a3  Ami-Let-7-P2a3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a3  Cfa-Let-7-P2a3  Cgi-Let-7  Cpi-Let-7-P2a3  Cpo-Let-7-P2a3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a3  Dpu-Let-7  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a3  Gja-Let-7-P2a3  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Hme-Let-7  Hsa-Let-7-P2a3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a3  Lgi-Let-7  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mdo-Let-7-P2a3  Mml-Let-7-P2a3  Mmu-Let-7-P2a3  Mun-Let-7-P2a3  Npo-Let-7  Oan-Let-7-P2a3  Obi-Let-7  Ocu-Let-7-P2a3  Ovu-Let-7  Pbv-Let-7-P2a3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a3  Sha-Let-7-P2a3  Sko-Let-7  Spt-Let-7-P2a3  Spu-Let-7  Sto-Let-7-P2a3  Tca-Let-7  Tgu-Let-7-P2a3  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Xbo-Let-7  Xla-Let-7-P2a3d  Xtr-Let-7-P2a3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG1: 3397087-3397157 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAGGGACGGACAGUCUGGGCGCUGUGGGCUGAGGUAGUAGUUUGUAUAGUUUUAGGAUCAUACCCGAUCUCGGAGAUAACUAUACAGCCUACUGUCUUUCCCACGGCGACCCGCAGAGCAGCAGAUCGCU
Get precursor sequence
Structure
        10         20         30        40        50        60     
CGAGGGACGGACAGUCU-   -|        CU   GU     U          UUAGGAUCAUAC 
                  GGG CGCUGUGGG  GAG  AGUAG UUGUAUAGUU            C
                  CCC GCGGCACCC  UUC  UCAUC GACAUAUCAA            C
UCGCUAGACGACGAGACG   A^        U-   UG     C          UAGAGGCUCUAG 
 .       120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Let-7-P2a3_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGUUUGUAUAGUU -22
Get sequence
Star sequence

Loc-Let-7-P2a3_3p*

mirBase accessionNone
Sequence
50- CUAUACAGCCUACUGUCUUUC -71
Get sequence