MirGeneDB 3.0
MirGeneDB ID

Xla-Let-7-P2a3d

Family name LET-7 (all species)
Seed GAGGUAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-let-7f
Paralogues Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xla-Let-7-P1c3  Xla-Let-7-P1c4  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xla-Let-7-P2c2  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xla-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a3  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a3  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2a3  Cfa-Let-7-P2a3  Cja-Let-7-P2a3  Cpi-Let-7-P2a3  Cpo-Let-7-P2a3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a3  Dpu-Let-7  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2a3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2a3  Gja-Let-7-P2a3  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2a3  Isc-Let-7  Laf-Let-7-P2a3  Lan-Let-7  Lch-Let-7-P2a3  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a3  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mdo-Let-7-P2a3  Mgi-Let-7  Mml-Let-7-P2a3  Mmr-Let-7-P2a3  Mmu-Let-7-P2a3  Mom-Let-7  Mun-Let-7-P2a3  Neu-Let-7-P2a3  Npo-Let-7  Oan-Let-7-P2a3  Obi-Let-7  Ocu-Let-7-P2a3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2a3  Pau-Let-7  Pbv-Let-7-P2a3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2a3  Rph-Let-7  Sha-Let-7-P2a3  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a3  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2a3  Tca-Let-7  Tgu-Let-7-P2a3  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xtr-Let-7-P2a3 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 36826128-36826198 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a3d)		 Let-7-P2b3d NC_030739.1: 36825865-36825942 [-] UCSC Ensembl
Let-7-P2a3d NC_030739.1: 36826128-36826198 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGUGUUCAGAGAUUGUGACGCUGCCGGAUGAGGUAGUAGAUUGUAUAGUUUUGGGGUCACACCCGAUCUGGGAGAUAACUAUACAGUUUACUGUCUUUCCUGCGGAGUUUCCAGCCUGCAAAUCCAUAA
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Structure
        10          20        30        40        50        60     
CAUGUGUUCAGAGAUUGU--|  G    C   U   GU                UUGGGGUCACAC 
                    GAC CUGC GGA GAG  AGUAGAUUGUAUAGUU            C
                    UUG GGCG CCU UUC  UCAUUUGACAUAUCAA            C
AAUACCUAAACGUCCGACCU^  A    U   -   UG                UAGAGGGUCUAG 
 .       120       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Let-7-P2a3d_5p
mirBase accessionMIMAT0046403
Sequence 
0- UGAGGUAGUAGAUUGUAUAGUU -22
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Star sequence

Xla-Let-7-P2a3d_3p* (predicted)
mirBase accessionMIMAT0046404
Sequence 
50- CUAUACAGUUUACUGUCUUUC -71
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