| MirGeneDB ID | Cmi-Let-7-P2c4 |
|---|
| Family name |
LET-7 (all species) |
|---|
| Seed |
GAGGUAG |
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| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
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| Paralogues |
Cmi-Let-7-P1d
Cmi-Let-7-P2a1
Cmi-Let-7-P2a2
Cmi-Let-7-P2a4
Cmi-Let-7-P2b2
Cmi-Let-7-P2b4
Cmi-Let-7-P2c1
Cmi-Let-7-P2c2
Cmi-Let-7-P2c3
|
|---|
| Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2c4
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Mgi-Let-7
Mom-Let-7
Mun-Let-7-P2c4
Npo-Let-7
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P2c4
Xtr-Let-7-P2c4
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635924.1: 186817-186889 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUGUAGGAUCGAGCUGUCAGUCCACUGCCAGAGGUAGUAGUUUGUGUAGUUUAAAAGGUUGUGACACCGCCUGGGAGAUAACUAUACAAUCUACUGCCUUGCCAGUGCUGCUUCAGAGCUACAGGACGAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGUGUAGGAUCGAGCUGU----| UC CCA U UAAAAGGUUGUGA
CAG CACUG GAGGUAGUAG UUGUGUAGUU C
GUC GUGAC UUCCGUCAUC AACAUAUCAA A
GGUAGCAGGACAUCGAGACUUC^ -- CG- U UAGAGGGUCCGCC
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Let-7-P2c4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGGUAGUAGUUUGUGUAGUU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Let-7-P2c4_3p* |
| mirBase accession | None |
|---|
| Sequence |
52- CUAUACAAUCUACUGCCUUGC -73
Get sequence
|
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