Mir-135-P1

MirGeneDB ID

Gga-Mir-135-P1

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-135a-1

Paralogues

Gga-Mir-135-P2 Gga-Mir-135-P4

Orthologues

Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(Gallus_gallus.GRCg6a)

12: 3411670-3411730 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-135-P1)

Let-7-P2c3 12: 3389994-3390071 [-] UCSC Ensembl
Mir-135-P1 12: 3411670-3411730 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGCCGAGCAUGGAGCGCCUCACUGUCCUGUAUGGCUUUUUAUUCCUAUGUGAUUAUACAUCCCGCUUCAUAUAGGGAUUGAAGCCGUGCAAGGCGCUGGGGUCCGACGGCGGGGAGCAGC

Get precursor sequence

Structure

        10          20        30        40        50        60
UGGCCGAGCAUGGAGCG--|    C    C           UU            UUAUAC 
                   CCUCA UGUC UGUAUGGCUUU  AUUCCUAUGUGA      A
                   GGGGU GCGG ACGUGCCGAAG  UAGGGAUAUACU      U
CGACGAGGGGCGGCAGCCU^    C    A           U-            UCGCCC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-135-P1_5p

mirBase accession

MIMAT0001099

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-135a-5p
miRDB: MIMAT0001099

Star sequence

Gga-Mir-135-P1_3p*

mirBase accession

MIMAT0031036

Sequence

39- AUAUAGGGAUUGAAGCCGUGCA -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-135a-1-3p
miRDB: MIMAT0031036