| MirGeneDB ID | Lch-Mir-135-P1 |
|---|---|
| Family name | MIR-135 (all species) |
| Seed | AUGGCUU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-135-P2 Lch-Mir-135-P4 |
| Orthologues | Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (LatCha1_add) |
JH126569.1: 3154915-3154976 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGCCACCAGCACCUGCUAUCCAUCAUGCUGUAUGGCUUUUUAUUCCUAUGUGAUUGUGCUUGUGUAUUUCAUAUAGGGAUGGAAGCCAUGAAGUAUGGUGGGAGAUACCCUUCAAUGAACAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGCCACCAGCACCUGCUA--| G U UUGUGCU UCCAUCAUGCU UAUGGCUUUU AUUCCUAUGUGA \ GGGUGGUAUGA GUACCGAAGG UAGGGAUAUACU U UACAAGUAACUUCCCAUAGA^ A - UUAUGUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-135-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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|
| Star sequence | Lch-Mir-135-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- AUAUAGGGAUGGAAGCCAUGAA -62
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|
