MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-135-P2  Loc-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(LepOcu1)		 LG5: 50409839-50409898 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCCCCAGCGCAUCGUCCCGCUGUGCUCUAUGGCUUUUUAUUCCUAUCUGACGGCUCUGGAGGCUCAUAUAGGGAUGGAAGCCAUGCAGCACGGUGGGGCCCCACCCUGCCCCCCCCC
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Structure
        10          20        30        40        50          
CCCCCCCCAGCGCAUCG--|           C          U        C   CGGCUC 
                   UCCCGCUGUGCU UAUGGCUUUU AUUCCUAU UGA      \
                   GGGGUGGCACGA GUACCGAAGG UAGGGAUA ACU      U
CCCCCCCCCGUCCCACCCC^           C          -        U   CGGAGG 
.       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-135-P1_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUCUGA -23
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Star sequence

Loc-Mir-135-P1_3p*
mirBase accessionNone
Sequence 
38- AUAUAGGGAUGGAAGCCAUGCA -60
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