MirGeneDB ID | Cja-Mir-135-P1 |
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Family name | MIR-135 (all species) |
Seed | AUGGCUU |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-135-P2 Cja-Mir-135-P4 |
Orthologues | Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Chordata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021929.1: 28590992-28591051 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAAGAGCAGCCCCAGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUAACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACACCCAGCAGAGGGCUCUGet precursor sequence |
Structure | 10 20 30 40 50 GCAAGAGCAGCCCCAGG--| UCU UU UUCUAC CCUCGCUGU CUAUGGCUUU AUUCCUAUGUGA \ GGGGCGGCA GGUGCCGAGG UAGGGAUAUACU U UCUCGGGAGACGACCCACA^ CGC U- CAAUCG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Cja-Mir-135-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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|
Star sequence | Cja-Mir-135-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
38- AUAUAGGGAUUGGAGCCGUGGC -60
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|