Mir-135-P1

MirGeneDB ID

Eca-Mir-135-P1

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-135a

Paralogues

Eca-Mir-135-P2 Eca-Mir-135-P4

Orthologues

Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009163.1: 36933009-36933068 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-135-P1)

Mir-135-P1 CM009163.1: 36933009-36933068 [+] UCSC Ensembl
Let-7-P2c3 CM009163.1: 36958030-36958107 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGGAGCAGCCCCAGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGGUGGCCAGCGGAGGGCUCG

Get precursor sequence

Structure

        10          20        30        40        50          
GCAGGAGCAGCCCCAGG--|        UCU          UU            UUCUAC 
                   CCUCGCUGU   CUAUGGCUUU  AUUCCUAUGUGA      \
                   GGGGCGGCA   GGUGCCGAGG  UAGGGAUAUACU      U
GCUCGGGAGGCGACCGGUG^        CGC          U-            CACUCG 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-135-P1_5p

mirBase accession

MIMAT0013078

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

Get sequence

Star sequence

Eca-Mir-135-P1_3p* (predicted)

mirBase accession

None

Sequence

38- AUAUAGGGAUUGGAGCCGUGGC -60

Get sequence