Mir-135-o1

MirGeneDB ID

Pma-Mir-135-o1

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-135a

Paralogues

Pma-Mir-135-o2

Orthologues

Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Chordata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046082.1: 3812001-3812061 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCAGCGGUAUAAAAUUGUAUCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGCUUCUGUAACCUCGCGUAGGGGUGAAAGCCAUGGAACACGGUGCAAAUUCUCUAUCCCGAGACCC

Get precursor sequence

Structure

        10           20        30        40        50        60
CUGCAGCGGUAUAAAAU---|   U     C            U            UUGCUU 
                    UGUA CUGUG UUUAUGGCUUUU AUUCCUAUGUGA      C
                    ACGU GGCAC AGGUACCGAAAG UGGGGAUGCGCU      U
CCCAGAGCCCUAUCUCUUAA^   -     A            -            CCAAUG 
 .       110       100         90        80         70