MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-135-P2  Gja-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015166421.1: 1929383-1929443 [+]
Precursor
(pre-Mir +30nt flank)
CAAAGAUAUGCCAUUUGCCUCAUUGUCUUCUAUGGCUUUUUAUUCCUAUGUGAUUGUAUUGCUAAUUUCAUAUAGGGAUUGAAGCCAUGCAAUACGCUGGGGGCUUGCGACGGAGGAUGCC
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Structure
        10          20        30        40        50        60
CAAAGAUAUGCCAUUUG--|    U   C  C         UU            UUGUAU 
                   CCUCA UGU UU UAUGGCUUU  AUUCCUAUGUGA      U
                   GGGGU GCA AA GUACCGAAG  UAGGGAUAUACU      G
CCGUAGGAGGCAGCGUUCG^    C   U  C         U-            UUAAUC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-135-P1_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Gja-Mir-135-P1_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUAUAGGGAUUGAAGCCAUGCA -61
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