MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-135-1
Paralogues Ami-Mir-135-P2  Ami-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713629.1: 3671053-3671113 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGAAGAAGCACUUUGGGUCCCACUGUGUUAUAUGGCUUUUUAUUCCUAUGUGAUUAUACUACUCCUUUCAUAUAGGGAUUGAAGCCGUGCAAUACGCUGGGGAUGGGCAGCGGAAAACAUC
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Structure
        10          20        30        40        50        60
AGAAGAAGCACUUUGGG--|    C      A         UU            UUAUAC 
                   UCCCA UGUGUU UAUGGCUUU  AUUCCUAUGUGA      U
                   GGGGU GCAUAA GUGCCGAAG  UAGGGAUAUACU      A
CUACAAAAGGCGACGGGUA^    C      C         U-            UUCCUC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-135-P1_5p
mirBase accessionMIMAT0038149
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Ami-Mir-135-P1_3p*
mirBase accessionMIMAT0038150
Sequence 
39- AUAUAGGGAUUGAAGCCGUGCA -61
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