MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-135-P2

Family name MIR-135 (all species)
Seed AUGGCUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-135-2
Paralogues Ami-Mir-135-P1  Ami-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cja-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Eca-Mir-135-P2  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Hsa-Mir-135-P2  Laf-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mal-Mir-135-P2b  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmr-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Neu-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pab-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Xla-Mir-135-P2c  Xla-Mir-135-P2d  Xtr-Mir-135-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714414.1: 12728185-12728244 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCUGAUCAAGAUAAAUUCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUAAGAUG
Get precursor sequence
Structure
        10           20        30        40        50          
UCUGAUCAAGAUAAAUU---|  UCUA                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGAAUCAACUACUAAAAA^  UUA-                -            CUGAAA 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-135-P2_5p
mirBase accessionMIMAT0038149
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Star sequence

Ami-Mir-135-P2_3p*
mirBase accessionMIMAT0038151
Sequence 
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence