Mir-135-P2

MirGeneDB ID

Cmi-Mir-135-P2

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-135-P1 Cmi-Mir-135-P4

Orthologues

Aca-Mir-135-P2 Ami-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Dre-Mir-135-P2a Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Gmo-Mir-135-P2a Gmo-Mir-135-P2b Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mal-Mir-135-P2a Mal-Mir-135-P2b Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Sto-Mir-135-P2 Tgu-Mir-135-P2 Tni-Mir-135-P2a Tni-Mir-135-P2b Xla-Mir-135-P2c Xla-Mir-135-P2d Xtr-Mir-135-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636091.1: 65455-65514 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGAAGAUAGAUUCACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAAGCUUCUGGAAGGCUGG

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Structure

        10        20           30        40        50          
AUGAAGAUAGAUUCACUCG   -     C--|            A           UUGUGA 
                   CUC CUGUG   UUUAUGGCUUUUU UUCCUAUGUGA      \
                   GAG GACAC   AAGUACCGAAGAG AGGGAUGUACU      C
GGUCGGAAGGUCUUCGAA-   U     AUA^            -           CUAGUA 
.       110        100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-135-P2_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

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Star sequence

Cmi-Mir-135-P2_3p*

mirBase accession

None

Sequence

38- AUGUAGGGAGAGAAGCCAUGAA -60

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