MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-135-P2

Family name MIR-135 (all species)
Seed AUGGCUU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-135-P1  Cmi-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cli-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Hsa-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mal-Mir-135-P2b  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Xla-Mir-135-P2c  Xla-Mir-135-P2d  Xtr-Mir-135-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI636091.1: 65455-65514 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAAGAUAGAUUCACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAAGCUUCUGGAAGGCUGG
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Structure
        10        20           30        40        50          
AUGAAGAUAGAUUCACUCG   -     C--|            A           UUGUGA 
                   CUC CUGUG   UUUAUGGCUUUUU UUCCUAUGUGA      \
                   GAG GACAC   AAGUACCGAAGAG AGGGAUGUACU      C
GGUCGGAAGGUCUUCGAA-   U     AUA^            -           CUAGUA 
.       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-135-P2_5p

mirBase accessionNone
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Cmi-Mir-135-P2_3p*

mirBase accessionNone
Sequence
38- AUGUAGGGAGAGAAGCCAUGAA -60
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