MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-135-P1  Cmi-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635924.1: 1082501-1082562 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCGAGGACCGGACUCGCUGAUGUGCUCUAUGGCUUUUUAUUCCUAUGUGAUGGUGUGUGUGUGUCUCGCCUAGGGGUGAAAGCCAUGGGAUAACUCAGUGAAUCAACCGUCUCCAUCCA
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Structure
        10          20        30        40        50        60 
UGCCCGAGGACCGGACU--|     UG  CU           U       U    UGGUGUG 
                   CGCUGA  UG  CUAUGGCUUUU AUUCCUA GUGA       \
                   GUGACU  AU  GGUACCGAAAG UGGGGAU CGCU       U
ACCUACCUCUGCCAACUAA^     CA  AG           -       C    CUGUGUG 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-135-P4_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Cmi-Mir-135-P4_3p*
mirBase accessionNone
Sequence 
40- GCCUAGGGGUGAAAGCCAUGGG -62
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