Mir-135-P4

MirGeneDB ID

Mmu-Mir-135-P4

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-135b

Paralogues

Mmu-Mir-135-P1 Mmu-Mir-135-P2

Orthologues

Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mun-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(mm10)

chr1: 132198103-132198163 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCACUGGACCCCUCCGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGCUCCGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUCCUGCACAGCU

Get precursor sequence

Structure

        10         20         30        40        50        60
GCCACUGGACCCCUCCG-    -|                  CAU          UUGCUG 
                  CUCU GCUGUGGCCUAUGGCUUUU   UCCUAUGUGA      C
                  GGGA UGACAUCGGGUACCGAAAA   GGGAUGUACU      U
UCGACACGUCCUCGAACG    G^                  UC-          CAAGCC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-135-P4_5p

mirBase accession

MIMAT0000612

Sequence

0- UAUGGCUUUUCAUUCCUAUGUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000612
TargetScanVert: mmu-miR-135b-5p
miRDB: MIMAT0000612

Star sequence

Mmu-Mir-135-P4_3p*

mirBase accession

MIMAT0017044

Sequence

39- AUGUAGGGCUAAAAGCCAUGGG -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-135b-3p
miRDB: MIMAT0017044