MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-135-2
Paralogues Xtr-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(xenTro9_add)		 chr2: 64757303-64757362 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUAUAAAAGUAUUCCCCCUGCUGAGGUAUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUCCUAAUUCACAUAGGGCAGAAAGCCAUGUGCUGCACAGGGGACAAGCGUCUCUGUAUGUU
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Structure
        10           20        30        40        50          
CCUUAUAAAAGUAUUCC---|    C  A               AU          UUGCUU 
                    CCCUG UG GGUAUAUGGCUUUUU  UCCUAUGUGA      \
                    GGGAC AC UCGUGUACCGAAAGA  GGGAUACACU      U
UUGUAUGUCUCUGCGAACAG^    -  G               C-          UAAUCC 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-135-P4_5p
mirBase accessionMIMAT0003598
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Proposed targets TargetScanVert: xtr-miR-135
Star sequence

Xtr-Mir-135-P4_3p*
mirBase accessionNone
Sequence 
38- ACAUAGGGCAGAAAGCCAUGUG -60
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