| MirGeneDB ID | Gmo-Mir-135-P4b |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-135c-2
|
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| Paralogues |
Gmo-Mir-135-P1
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Gmo-Mir-135-P4a
|
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| Orthologues |
Aca-Mir-135-P4
Ami-Mir-135-P4
Bta-Mir-135-P4
Cfa-Mir-135-P4
Cja-Mir-135-P4
Cli-Mir-135-P4
Cmi-Mir-135-P4
Cpi-Mir-135-P4
Cpo-Mir-135-P4
Dno-Mir-135-P4
Dre-Mir-135-P4b
Eca-Mir-135-P4
Ete-Mir-135-P4
Gga-Mir-135-P4
Gja-Mir-135-P4
Hsa-Mir-135-P4
Laf-Mir-135-P4
Lch-Mir-135-P4
Loc-Mir-135-P4
Mal-Mir-135-P4b
Mdo-Mir-135-P4
Mml-Mir-135-P4
Mmr-Mir-135-P4
Mmu-Mir-135-P4
Mun-Mir-135-P4
Neu-Mir-135-P4
Oan-Mir-135-P4
Ocu-Mir-135-P4
Pab-Mir-135-P4
Pbv-Mir-135-P4
Rno-Mir-135-P4
Sha-Mir-135-P4
Spt-Mir-135-P4
Sto-Mir-135-P4
Tgu-Mir-135-P4
Tni-Mir-135-P4b
Xla-Mir-135-P4
Xtr-Mir-135-P4
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1609: 1266799-1266861 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGUAUGUCUCUCUUUACCCGAUGUGCAUCUUAUGGCUUUCUAUUCCUAUGUGAGUUGUGCUCUUGAGGAUCACGUAGGGUUCAAAGCCAUUGGAUGCUCUGGGGACCGUCCACGUGACUUUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGUAUGUCUCUCUUUAC----| AUGU U CUAU GUUGUGC
CCG GCAUCU AUGGCUUU UCCUAUGUGA U
GGU CGUAGG UACCGAAA GGGAUGCACU C
CGUUUCAGUGCACCUGCCAGG^ CU-- U CUU- AGGAGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-135-P4b_5p |
| mirBase accession | MIMAT0044130 |
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| Sequence |
0- UAUGGCUUUCUAUUCCUAUGUGA -23
Get sequence
|
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| Star sequence |
Gmo-Mir-135-P4b_3p* |
| mirBase accession | None |
|---|
| Sequence |
41- ACGUAGGGUUCAAAGCCAUUGG -63
Get sequence
|
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