MirGeneDB ID | Laf-Mir-135-P4 |
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Family name | MIR-135 (all species) |
Seed | AUGGCUU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-135-P1 Laf-Mir-135-P2 |
Orthologues | Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Chordata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010040.1: 10428233-10428293 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCUGCUGGAGCCCUCAUCUCUGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCGUGCUUCUCCUGCAGCGet precursor sequence |
Structure | 10 20 30 40 50 60 GCUGCUGGAGCCCUCAU- -| CG CAU UUGCUG CUCU GCUG GCCUAUGGCUUUU UCCUAUGUGA U GGGA UGAC CGGGUACCGAAAA GGGAUGUACU U CGACGUCCUCUUCGUGCG G^ AU UC- CAACCC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Laf-Mir-135-P4_5p |
mirBase accession | None |
Sequence |
0- UAUGGCUUUUCAUUCCUAUGUGA -23
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|
Star sequence | Laf-Mir-135-P4_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AUGUAGGGCUAAAAGCCAUGGG -61
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