MirGeneDB 2.1

MirGeneDB ID

Mun-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-135-P1  Mun-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(Mun_miRNA_loci)
135-P3_LR594643.1:4420868-4421009: 42-101 [-]
Precursor
(pre-Mir +30nt flank)
CUUUGUACCCAUCGACCCUCUGCUGUGGUGUAUGGCUUUUUAUUCCUAUGUGAUGCUCUUCCUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACUCAGAGGAUGCACCACCUCCUUGGGC
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Structure
        10           20        30        40        50          
CUUUGUACCCAUCGACC---|    CU     G          UAU          UGCUCU 
                    CUCUG  GUGGU UAUGGCUUUU   UCCUAUGUGA      \
                    GAGAC  CAUCG GUACCGAAAA   GGGAUGUACU      U
CGGGUUCCUCCACCACGUAG^    U-     G          UC-          CAAUCC 
.       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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To
Mature sequence

Mun-Mir-135-P4_5p

mirBase accessionNone
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Mun-Mir-135-P4_3p* (predicted)

mirBase accessionNone
Sequence
38- AUGUAGGGCUAAAAGCCAUGGG -60
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