MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-135-P4a

Family name MIR-135 (all species)
Seed AUGGCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-135a
Paralogues Tni-Mir-135-P1  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Tni-Mir-135-P4b 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
11: 11400949-11401009 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCGGCAUGACUGGCUCGCUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAGUGGGAGAUCAGCUGAGAACGCA
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Structure
        10           20        30        40        50        60
UACCGGCAUGACUGGCU---|   G     UU U        CUAU          UUUUCU 
                    CGCU CUGUG  U AUGGCUUU    UCCUAUGUGA      C
                    GUGA GACAU  G UACCGAAA    GGGAUACACU      U
ACGCAAGAGUCGACUAGAGG^   -     GG U        UCU-          GUACGA 
 .       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-135-P4a_5p (predicted)

mirBase accessionMIMAT0003052
Sequence
0- UAUGGCUUUCUAUUCCUAUGUGA -23
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Star sequence

Tni-Mir-135-P4a_3p* (predicted)

mirBase accessionNone
Sequence
39- ACAUAGGGUCUAAAGCCAUUGG -61
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