Mir-135-P4

MirGeneDB ID

Rno-Mir-135-P4

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-135b

Paralogues

Rno-Mir-135-P1 Rno-Mir-135-P2

Orthologues

Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Laf-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(rn6)

chr13: 48977001-48977061 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCACUGGACCCCUCCGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUCCUGCACAACU

Get precursor sequence

Structure

        10         20         30        40        50        60
GCCACUGGACCCCUCCG-    -|                  CAU          UUGCUG 
                  CUCU GCUGUGGCCUAUGGCUUUU   UCCUAUGUGA      U
                  GGGA UGACAUCGGGUACCGAAAA   GGGAUGUACU      U
UCAACACGUCCUCGAACG    G^                  UC-          CAAGCC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-135-P4_5p

mirBase accession

MIMAT0000611

Sequence

0- UAUGGCUUUUCAUUCCUAUGUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000611
TargetScanVert: rno-miR-135b-5p
miRDB: MIMAT0000611

Star sequence

Rno-Mir-135-P4_3p*

mirBase accession

MIMAT0017043

Sequence

39- AUGUAGGGCUAAAAGCCAUGGG -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-135b-3p
miRDB: MIMAT0017043