MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-135a-3
Paralogues Gga-Mir-135-P1  Gga-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(Gallus_gallus.GRCg6a)
26: 2124466-2124526 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAUCCUCGGUAAGCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCCUAACUCAUGUAGGGCGAAAAGCCAUGGGCUACUCAGGGGAGGGACUCCACCUUCCAGG
Get precursor sequence
Structure
        10           20        30        40        50        60
CUUAUCCUCGGUAAGCC---|    CU                 AU          UUGCUU 
                    CUCUG  GUGGUCUAUGGCUUUUU  UCCUAUGUGA      U
                    GGGAC  CAUCGGGUACCGAAAAG  GGGAUGUACU      U
GGACCUUCCACCUCAGGGAG^    U-                 C-          CAAUCC 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-135-P4_5p

mirBase accessionMIMAT0001099
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-135a-5p
miRDB: MIMAT0001099
Star sequence

Gga-Mir-135-P4_3p*

mirBase accessionMIMAT0031038
Sequence
39- AUGUAGGGCGAAAAGCCAUGGG -61
Get sequence
Proposed targets TargetScanVert: gga-miR-135a-3-3p
miRDB: MIMAT0031038