MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-135-P1  Sto-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_003427355_STO_add)		 BFAA01000334.1: 138445-138504 [-]
Precursor
(pre-Mir +30nt flank)
UUUGGUGUGUGCAGAGUCGCUGCUGUGCCCUAUGGCUUUUUAUUCCUAUGUGAUAGUAUUUUGGCCUCACAUAGGGGUGAAAGCCAUGGGAUACAGGGUGAGAAACGCAUCUGCAAUUAC
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Structure
        10           20        30        40        50          
UUUGGUGUGUGCAGAGU---|   G     C            U            UAGUAU 
                    CGCU CUGUG CCUAUGGCUUUU AUUCCUAUGUGA      \
                    GUGG GACAU GGGUACCGAAAG UGGGGAUACACU      U
CAUUAACGUCUACGCAAAGA^   -     A            -            CCGGUU 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-135-P4_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Sto-Mir-135-P4_3p*
mirBase accessionNone
Sequence 
38- ACAUAGGGGUGAAAGCCAUGGG -60
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