MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-135-P1  Cja-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021933.1: 29167548-29167608 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGCUGGACCCCUCCACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUCCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUCCUUCUCCUGC
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Structure
        10         20         30        40        50        60
GCCGCUGGACCCCUCCA-    -|                  CAU          UUGCUG 
                  CUCU GCUGUGGCCUAUGGCUUUU   UCCUAUGUGA      U
                  GGGA UGACAUCGGGUACCGAAAA   GGGAUGUACU      C
CGUCCUCUUCCUCGAACG    G^                  UC-          CAAACC 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Cja-Mir-135-P4_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUCAUUCCUAUGUGA -23
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Star sequence

Cja-Mir-135-P4_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUGUAGGGCUAAAAGCCAUGGG -61
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