MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-135-3
Paralogues Cli-Mir-135-P1  Cli-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(colLiv2)		 scaffold176: 178807-178867 [+]
Precursor
(pre-Mir +30nt flank)
CUUAUCCUGGGUAAGCCCUCUGCUGUGGUUUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCCUAACUCAUGUAGGGCGAAAAGCCAUGGGCUACACAGAGGAGGGACUCCACCUUCCAGG
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Structure
        10           20        30        40        50        60
CUUAUCCUGGGUAAGCC---|    C                  AU          UUGCUU 
                    CUCUG UGUGGUUUAUGGCUUUUU  UCCUAUGUGA      U
                    GAGAC ACAUCGGGUACCGAAAAG  GGGAUGUACU      U
GGACCUUCCACCUCAGGGAG^    -                  C-          CAAUCC 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-135-P4_5p
mirBase accessionMIMAT0038514
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Cli-Mir-135-P4_3p*
mirBase accessionMIMAT0038517
Sequence 
39- AUGUAGGGCGAAAAGCCAUGGG -61
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