MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-135-P4a

Family name MIR-135 (all species)
Seed AUGGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-135c-1
Paralogues Dre-Mir-135-P1  Dre-Mir-135-P2a  Dre-Mir-135-P4b 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(danRer11)		 chr11: 38175079-38175140 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCGGUCUCACUUGGUCACUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUUCUGCCGUGUCACAUAGGGUUCAAAGCCAUUGGGUACAGAGUGGAAACGCAACUGAUGGUUAU
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Structure
        10           20        30        40        50        60 
UGGCGGUCUCACUUGGU---|   G     UU U        CUAU          UUUUCUU 
                    CACU CUGUG  U AUGGCUUU    UCCUAUGUGA       \
                    GUGA GACAU  G UACCGAAA    GGGAUACACU       C
UAUUGGUAGUCAACGCAAAG^   -     GG U        CUU-          GUGCCGU 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-135-P4a_5p
mirBase accessionMIMAT0001833
Sequence 
0- UAUGGCUUUCUAUUCCUAUGUGA -23
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Proposed targets TargetScanFish: dre-miR-135c
Star sequence

Dre-Mir-135-P4a_3p*
mirBase accessionNone
Sequence 
40- ACAUAGGGUUCAAAGCCAUUGG -62
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