MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-135-P2a

Family name MIR-135 (all species)
Seed AUGGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-135a
Paralogues Dre-Mir-135-P1  Dre-Mir-135-P4a  Dre-Mir-135-P4b 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cja-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Eca-Mir-135-P2  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Hsa-Mir-135-P2  Laf-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmr-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Neu-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pab-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Xtr-Mir-135-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(danRer11)		 chr25: 31044133-31044192 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCGGUGCUCCCGUUACAGCUGUCGUGUCUUAUGGCUUUUUAUUCCUAUGUGAAGGUGAACAAGGCUCAUGUAGGGAUACAAGCCACUAAACACGCAGUCAGAAAUCAGCUUUUUAAUUC
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Structure
        10           20        30         40        50          
CGCGGUGCUCCCGUUACA---|   U     C   -      UU             AGGUGA 
                     GCUG CGUGU UUA UGGCUU  UAUUCCUAUGUGA      \
                     UGAC GCACA AAU ACCGAA  AUAGGGAUGUACU      A
CUUAAUUUUUCGACUAAAGAC^   -     -   C      C-             CGGAAC 
.       110       100          90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-135-P2a_5p
mirBase accessionMIMAT0003348
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Proposed targets TargetScanFish: dre-miR-135a
Star sequence

Dre-Mir-135-P2a_3p*
mirBase accessionNone
Sequence 
38- AUGUAGGGAUACAAGCCACUAA -60
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