MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-135-P2

Family name MIR-135 (all species)
Seed AUGGCUU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-135a
Paralogues Oan-Mir-135-P1  Oan-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Hsa-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mal-Mir-135-P2b  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Ocu-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Xla-Mir-135-P2c  Xla-Mir-135-P2d  Xtr-Mir-135-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041741.1: 36251177-36251236 [+]
Precursor
(pre-Mir +30nt flank)
UCUGAUCAAGAUAAAUUCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUAAGCUG
Get precursor sequence
Structure
        10           20        30        40        50          
UCUGAUCAAGAUAAAUU---|  UCUA                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUCGAAUCAACUACUAAAAA^  UUA-                -            CUGAAA 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-135-P2_5p

mirBase accessionNone
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Star sequence

Oan-Mir-135-P2_3p*

mirBase accessionMIMAT0007193
Sequence
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence